Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_1124HTH-type transcriptional regulator, putative. (65 aa)    
Predicted Functional Partners:
TGAM_1125
Conserved hypothetical protein; 5 probable transmembrane helices predicted by modhmm.
  
    0.661
TGAM_1122
ABC-type transport system, ATPase component, putative multidrug transporter.
     
 0.653
natB
ABC-type transport protein, Na+ efflux pump membrane component (natB); 6 probable transmembrane helices predicted by modhmm.
       0.649
TGAM_1123
Conserved hypothetical protein; 3 probable transmembrane helices predicted by modhmm.
       0.649
TGAM_0975
Transcription regulator, HTH/deoR family.
       0.420
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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