Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TGAM_1190Conserved hypothetical protein. (132 aa)    
Predicted Functional Partners:
TGAM_1191
Conserved hypothetical protein.
       0.914
TGAM_1192
Base excision DNA repair protein, HhH-GPD superfamily.
       0.914
TGAM_1193
ATPase, putative, PP-loop superfamily.
       0.816
TGAM_1901
Membrane permease, stomatin-like protein; 1 probable transmembrane helix predicted by modhmm.
       0.649
nfeD
Membrane bound protease, putative, nfeD/ClpP- family (nfeD); 4 probable transmembrane helices predicted by modhmm.
       0.649
TGAM_1903
Conserved hypothetical protein.
       0.649
TGAM_1194
RNA-binding protein, putative; Contains CRS1 / YhbY domain.
       0.567
rps19E
SSU ribosomal protein S19E (rps19E); May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
       0.567
minD-1
Cell division ATPase MinD (minD).
       0.479
TGAM_1784
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.479
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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