Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
racD-1Aspartate racemase (racD). (234 aa)    
Predicted Functional Partners:
TGAM_0001
Putative asparagine synthase, glutamine-hydrolyzing.
 
 
 0.950
asnB
Asparagine synthase (glutamine-hydrolyzing) (asnB).
  
 
 0.943
racD-2
Aspartate racemase (racD).
  
  
 
0.915
pyrB
Aspartate carbamoyltransferase, catalytic subunit (pyrB).
    
 0.910
TGAM_2143
Asparagine synthetase related protein.
    
 0.909
gatD-2
Glutamyl-tRNA(Gln) amidotransferase subunit D (gatD).
    
 0.907
aspC-2
Aspartate aminotransferase (aspC).
    
 0.903
aspC-3
Aspartate aminotransferase (aspC).
    
 0.903
nadB
L-aspartate oxidase (quinolinate synthetase B) (nadB); Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.902
purA
Adenylosuccinate synthetase (purA); Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.900
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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