Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pcmProtein-L-isoaspartate O-methyltransferase (pcm); Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. (220 aa)    
Predicted Functional Partners:
flaJ
Flagella-related protein J, type II secretion system protein F (flaJ); 9 probable transmembrane helices predicted by modhmm.
       0.866
flaH
Flagella-related protein H, putative ATPase (flaH).
       0.862
flaI
Flagella-related protein I, type II/IV secretion system protein E (flaI).
       0.862
surE
Acid phosphatase SurE (surE); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
 
  
 0.833
flaF
Archaeal flagellar protein F (flaF); 1 probable transmembrane helix predicted by modhmm.
       0.827
flaG
Archaeal flagellar protein G (flaG); 1 probable transmembrane helix predicted by modhmm.
       0.827
flaC
Flagella accessory protein C (flaC).
       0.804
flaD/E
Flagella accessory protein D or E (flaD/E).
       0.804
flaB5
Flagellin B5 precursor (flaB5); Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
       0.792
flaB4
Flagellin B4 precursor (flaB4); Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
       0.772
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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