STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdeAmylo-alpha-1,6-glucosidase, putative archaeal type glycogen debranching enzyme (gde). (620 aa)    
Predicted Functional Partners:
glgP
Alpha-glucan phosphorylase (glgP).
  
 0.970
TGAM_1569
Glycosylase; PH1107-related family. Contains DUF377 domain.
  
  
 0.841
fucI
L-fucose isomerase (fucI).
       0.798
TGAM_1570
Permease, major facilitator superfamily; 12 probable transmembrane helices predicted by modhmm.
 
  
 0.659
scrK
Fructokinase (scrK); 1 probable transmembrane helix predicted by modhmm.
     
 0.615
amyA-2
Alpha-amylase (amyA).
  
 
 0.597
apu-3
Amylopullulanase related protein (Apu); 2 probable transmembrane helices predicted by modhmm.
     
 0.557
malG
Maltose transport system permease protein (malG); 5 probable transmembrane helices predicted by modhmm.
 
     0.524
pulhA
Pullulan hydrolase type III (pulhA); 1 probable transmembrane helix predicted by modhmm.
 
 
 
 0.405
TGAM_0440
Glycosyltransferase, family 1.
 
 
 0.401
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.