Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
TGAM_1644ABC-type transporter, periplasmic component, surface adhesin; 2 probable transmembrane helices predicted by modhmm. (327 aa)    
Predicted Functional Partners:
mntC
Manganese ABC-type transporter, permease component (mntC); 9 probable transmembrane helices predicted by modhmm.
 
  
 0.958
mntB
Manganese ABC-type transporter ATP-binding protein (mntB).
 
  
 0.956
rps14P
SSU ribosomal protein S14P (rps14P); Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.637
TGAM_1645
Conserved hypothetical protein.
       0.620
TGAM_1646
Phosphoribosyltransferase.
       0.608
TGAM_0472
Iron dependent transcription repressor; Contains HTH_DTXR domain.
  
  
 0.556
TGAM_1648
Conserved hypothetical protein; Contains a TPR-like domain.
  
    0.472
TGAM_1647
Conserved hypothetical protein; 4 probable transmembrane helices predicted by modhmm.
       0.470
TGAM_1855
Amino acid transporter; 12 probable transmembrane helices predicted by modhmm.
     
 0.463
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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