Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TGAM_0001 | TGAM_2143 | TGAM_0001 | TGAM_2143 | Putative asparagine synthase, glutamine-hydrolyzing. | Asparagine synthetase related protein. | 0.916 |
TGAM_0001 | asd | TGAM_0001 | TGAM_1810 | Putative asparagine synthase, glutamine-hydrolyzing. | Aspartate-semialdehyde dehydrogenase (asd). | 0.653 |
TGAM_0001 | asnB | TGAM_0001 | TGAM_1938 | Putative asparagine synthase, glutamine-hydrolyzing. | Asparagine synthase (glutamine-hydrolyzing) (asnB). | 0.959 |
TGAM_0001 | aspC-2 | TGAM_0001 | TGAM_1590 | Putative asparagine synthase, glutamine-hydrolyzing. | Aspartate aminotransferase (aspC). | 0.948 |
TGAM_0001 | aspC-3 | TGAM_0001 | TGAM_1838 | Putative asparagine synthase, glutamine-hydrolyzing. | Aspartate aminotransferase (aspC). | 0.944 |
TGAM_0001 | hom | TGAM_0001 | TGAM_2031 | Putative asparagine synthase, glutamine-hydrolyzing. | Homoserine dehydrogenase (hom). | 0.549 |
TGAM_0001 | lysA | TGAM_0001 | TGAM_1320 | Putative asparagine synthase, glutamine-hydrolyzing. | Diaminopimelate decarboxylase (lysA). | 0.722 |
TGAM_0001 | lysC | TGAM_0001 | TGAM_1807 | Putative asparagine synthase, glutamine-hydrolyzing. | Aspartate kinase (lysC). | 0.967 |
TGAM_0001 | thrB | TGAM_0001 | TGAM_1808 | Putative asparagine synthase, glutamine-hydrolyzing. | Homoserine kinase (thrB); Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.484 |
TGAM_2143 | TGAM_0001 | TGAM_2143 | TGAM_0001 | Asparagine synthetase related protein. | Putative asparagine synthase, glutamine-hydrolyzing. | 0.916 |
TGAM_2143 | asnB | TGAM_2143 | TGAM_1938 | Asparagine synthetase related protein. | Asparagine synthase (glutamine-hydrolyzing) (asnB). | 0.916 |
TGAM_2143 | aspC-2 | TGAM_2143 | TGAM_1590 | Asparagine synthetase related protein. | Aspartate aminotransferase (aspC). | 0.909 |
TGAM_2143 | aspC-3 | TGAM_2143 | TGAM_1838 | Asparagine synthetase related protein. | Aspartate aminotransferase (aspC). | 0.909 |
TGAM_2143 | lysC | TGAM_2143 | TGAM_1807 | Asparagine synthetase related protein. | Aspartate kinase (lysC). | 0.866 |
asd | TGAM_0001 | TGAM_1810 | TGAM_0001 | Aspartate-semialdehyde dehydrogenase (asd). | Putative asparagine synthase, glutamine-hydrolyzing. | 0.653 |
asd | asnB | TGAM_1810 | TGAM_1938 | Aspartate-semialdehyde dehydrogenase (asd). | Asparagine synthase (glutamine-hydrolyzing) (asnB). | 0.697 |
asd | aspC-2 | TGAM_1810 | TGAM_1590 | Aspartate-semialdehyde dehydrogenase (asd). | Aspartate aminotransferase (aspC). | 0.419 |
asd | aspC-3 | TGAM_1810 | TGAM_1838 | Aspartate-semialdehyde dehydrogenase (asd). | Aspartate aminotransferase (aspC). | 0.420 |
asd | hom | TGAM_1810 | TGAM_2031 | Aspartate-semialdehyde dehydrogenase (asd). | Homoserine dehydrogenase (hom). | 0.980 |
asd | lysA | TGAM_1810 | TGAM_1320 | Aspartate-semialdehyde dehydrogenase (asd). | Diaminopimelate decarboxylase (lysA). | 0.650 |
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