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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_1973Conserved hypothetical protein. (58 aa)    
Predicted Functional Partners:
truB
Centromere binding protein CBF5/pseudouridine synthase truB-like protein (truB); Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
       0.592
TGAM_1971
Hypothetical protein; 7 probable transmembrane helices predicted by modhmm.
       0.542
rsmC
Ribosomal RNA small subunit methyltransferase C (rsmC).
       0.519
rpl14E
LSU ribosomal protein L14E (rpl14E); Belongs to the eukaryotic ribosomal protein eL14 family.
       0.493
cmk
Cytidylate kinase, putative (cmk); 1 probable transmembrane helix predicted by modhmm.
       0.493
rpl34E
LSU ribosomal protein L34E (rpl34E); Belongs to the eukaryotic ribosomal protein eL34 family.
       0.493
TGAM_1977
Conserved hypothetical protein; Belongs to DUF106 family; 3 probable transmembrane helices predicted by modhmm.
       0.425
adkA
Archaeal adenylate kinase (ATP-AMP transphosphorylase) (adkA); Belongs to the archaeal adenylate kinase family.
       0.425
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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