STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl3PLSU ribosomal protein L3P (rpl3P); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (346 aa)    
Predicted Functional Partners:
rpl21E
LSU ribosomal protein L21E (rpl21E); Belongs to the eukaryotic ribosomal protein eL21 family.
  
 0.999
rps6E
SSU ribosomal protein S6E (rps6E); Belongs to the eukaryotic ribosomal protein eS6 family.
  
 
 0.999
rpl31E
LSU ribosomal protein L31E (rpl31E); Belongs to the eukaryotic ribosomal protein eL31 family.
   
 0.999
rpl15E
LSU ribosomal protein L15E (rpl15E); Belongs to the eukaryotic ribosomal protein eL15 family.
 
 0.999
rpl24E
LSU ribosomal protein L24E (rpl24E); Binds to the 23S rRNA.
  
 0.999
rpl7AE
LSU ribosomal protein L7AE (rpl7AE); Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
 
 0.999
rpl30E
LSU ribosomal protein L30E (rpl30E); Belongs to the eukaryotic ribosomal protein eL30 family.
 
 0.999
rpl40E
LSU ribosomal protein L40E (rpl40E); Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.999
rpl13P
LSU ribosomal protein L13P (rpl13P); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 0.999
rpl14E
LSU ribosomal protein L14E (rpl14E); Belongs to the eukaryotic ribosomal protein eL14 family.
  
 0.999
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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