Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tatD-2Deoxyribonuclease TatD-related protein (TatD). (281 aa)    
Predicted Functional Partners:
TGAM_2016
Putative Translation factor; 1 probable transmembrane helix predicted by modhmm.
       0.910
rpl40E
LSU ribosomal protein L40E (rpl40E); Belongs to the eukaryotic ribosomal protein eL40 family.
 
     0.743
TGAM_2122
RNA-binding protein, containing PUA domain.
  
     0.683
TGAM_0852
Nonsense-mediated mRNA decay protein, NMD3-like protein.
 
     0.668
TGAM_1383
Radical SAM protein, predicted Fe-S oxidoreductase.
  
     0.652
TGAM_0104
Conserved archaeal hypothetical protein.
  
     0.620
asnS-2
Asparaginyl-tRNA synthetase related protein (asnS).
       0.610
TGAM_0404
HTH-type transcriptional regulator, putative.
  
     0.609
TGAM_1344
Conserved hypothetical protein; Belongs to DUF555 family; Belongs to the UPF0212 family.
 
     0.571
TGAM_0514
Zinc-finger protein, translation initiation factor 2 beta related protein; UCP015877 member.
  
     0.567
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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