Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_2076Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm. (392 aa)    
Predicted Functional Partners:
thrC-2
Threonine synthase (thrC).
       0.914
TGAM_2079
Dioxygenase, putative.
       0.792
radB
DNA repair and recombination protein radB (radB); Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange.
 
     0.661
psmB-2
Peptidase T1A, 20S proteasome beta-subunit (psmB); Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
       0.649
TGAM_2075
Metallo-beta-lactamase superfamily protein.
       0.609
fecE-2
Iron(III) dicitrate ABC transporter, ATP-binding protein (fecE).
       0.608
fecD-2
Iron(III) dicitrate transport system permease protein (fecD); 8 probable transmembrane helices predicted by modhmm.
       0.608
TGAM_2078
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.539
TGAM_0840
Predicted permease; Belongs to DUF81 family; 9 probable transmembrane helices predicted by modhmm.
  
     0.463
flaJ
Flagella-related protein J, type II secretion system protein F (flaJ); 9 probable transmembrane helices predicted by modhmm.
  
     0.439
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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