Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arsBArsenical pump membrane protein (arsB); 12 probable transmembrane helices predicted by modhmm. (426 aa)    
Predicted Functional Partners:
uspA-2
Universal stress DNA-binding protein (UspA).
     
 0.921
TGAM_2110
Conserved hypothetical protein.
       0.905
lon
Archaeal serine protease, Lon protease-like protein (lon); 3 probable transmembrane helices predicted by modhmm; Belongs to the peptidase S16 family.
       0.656
TGAM_1855
Amino acid transporter; 12 probable transmembrane helices predicted by modhmm.
  
  
 0.633
speB
Agmatinase, putative, arginase family protein (speB); Belongs to the arginase family.
     
 0.526
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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