Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ubiEUbiquinone/menaquinone biosynthesis methyltransferase (UbiE). (200 aa)    
Predicted Functional Partners:
TGAM_2114
Conserved hypothetical protein; Belongs to DUF431 family.
  
  
 0.842
TGAM_2043
SAM-dependent methyltransferase, ubiE/COQ5 family.
  
     0.607
TGAM_2112
Phosphoadenosine phosphosulfate (PAPS) reductase related protein.
       0.559
focA
Formate transporter (focA); 8 probable transmembrane helices predicted by modhmm.
  
   
 0.521
rps5P
SSU ribosomal protein S5P (rps5P); With S4 and S12 plays an important role in translational accuracy.
    
 0.476
TGAM_0970
WD40-domain containing protein; 1 probable transmembrane helix predicted by modhmm.
 
 0.474
hsp20
Small heat shock protein, Hsp20 type (Hsp20).
      
 0.455
TGAM_2115
Hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.449
TGAM_1486
Conserved hypothetical protein; Contains 3 WD-40 repeat units; 2 probable transmembrane helices predicted by modhmm.
 
 0.447
mbxJ
Membrane bound oxidoreductase, MbxJ subunit (MbxJ); Belongs to the complex I 20 kDa subunit family.
    
 0.438
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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