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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_2124Metallophosphoesterase, calcineurin superfamily; 1 probable transmembrane helix predicted by modhmm. (611 aa)    
Predicted Functional Partners:
TGAM_2125
Conserved hypothetical protein; Contains 1 Cupin, RmlC-type domain.
       0.614
TGAM_2122
RNA-binding protein, containing PUA domain.
       0.576
TGAM_2123
Conserved hypothetical protein; Contains probably 1 tRNA-binding domain (SSF46589) in Nterm and 1 t-snare domain (SSF47661) in Cterm.
       0.576
TGAM_0023
Transcription regulator, ArsR family.
  
     0.460
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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