STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfnAL-tyrosine decarboxylase (mfnA); Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily. (383 aa)    
Predicted Functional Partners:
TGAM_0403
Conserved hypothetical protein; Contains DUF137 domain.
 
  
 0.951
TGAM_0179
Pyridoxal phosphate-dependent aminotransferase, class III family; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.937
TGAM_0307
Pyridoxal phosphate-dependent aminotransferase, class III family; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.937
aspC-2
Aspartate aminotransferase (aspC).
  
 
 0.915
aspC-3
Aspartate aminotransferase (aspC).
  
 
 0.915
hisC-1
Histidinol-phosphate aminotransferase (hisC).
    
 0.907
hisC-2
Histidinol-phosphate aminotransferase (hisC).
    
 0.907
napA
Na+/H+ antiporter (napA); 12 probable transmembrane helices predicted by modhmm.
  
  
 0.897
TGAM_2135
Conserved hypothetical protein; Contains DUF131 domain; 2 probable transmembrane helices predicted by modhmm.
       0.892
asnA
L-asparaginase (asnA).
  
  
 0.842
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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