STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_2139Polysaccharide biosynthesis protein; 14 probable transmembrane helices predicted by modhmm. (514 aa)    
Predicted Functional Partners:
algD
GDP-mannose 6-dehydrogenase (algD).
  
  
 0.708
TGAM_2138
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.513
TGAM_0409
Glycosyltransferase, family 1.
 
  
 0.509
TGAM_2152
NDP-sugar dehydrogenase, containing HINT/DOD homing endonuclease intein; Intein span: 280 - 748.
 
  
 0.507
TGAM_0002
Glycosyltransferase, family 1.
 
  
 0.494
TGAM_0016
Glycosyltransferase, family 1.
 
  
 0.480
TGAM_0440
Glycosyltransferase, family 1.
 
  
 0.474
TGAM_2142
Glycosyltransferase, family 1.
 
  
 0.463
TGAM_0901
Glycosyltransferase, family 1.
 
  
 0.461
dpm1-2
Dolichol-phosphate mannosyltransferase (dpm1); 2 probable transmembrane helices predicted by modhmm.
  
  
 0.426
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.