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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_2152NDP-sugar dehydrogenase, containing HINT/DOD homing endonuclease intein; Intein span: 280 - 748. (919 aa)    
Predicted Functional Partners:
degT
Pleiotropic regulatory protein, pyridoxal-phosphate-dependent aminotransferase (degT); Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.933
TGAM_2151
Oxidoreductase, substrate unknown; Belongs to the GFO/IDH/MOCA family.
 
  
 0.865
TGAM_2149
Acetyl/acyl transferase related protein.
 
   
 0.817
algD
GDP-mannose 6-dehydrogenase (algD).
 
   
0.732
TGAM_1072
Putative phosphoglycolate phosphatase fused to dolichol-phosphate mannose synthase (pgp/Dpm1).
  
  
 0.700
TGAM_2142
Glycosyltransferase, family 1.
 
  
 0.658
TGAM_2154
Conserved hypothetical protein; Belongs to DUF354 family.
 
   
 0.642
TGAM_2145
Glycosyltransferase, family 1, putative.
 
  
 0.633
TGAM_2148
Glycosyltransferase, family 2.
  
  
 0.629
galU
UTP-glucose-1-phosphate uridylyltransferase (galU).
     
 0.616
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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