Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFS29743.1 | SFS53416.1 | SAMN04488006_0268 | SAMN04488006_1902 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.713 |
SFS29743.1 | aroC | SAMN04488006_0268 | SAMN04488006_2630 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.929 |
SFS29817.1 | SFS34334.1 | SAMN04488006_0310 | SAMN04488006_0826 | Isochorismate synthase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.483 |
SFS29817.1 | SFS53416.1 | SAMN04488006_0310 | SAMN04488006_1902 | Isochorismate synthase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.943 |
SFS29817.1 | SFS53427.1 | SAMN04488006_0310 | SAMN04488006_1903 | Isochorismate synthase. | Prephenate dehydrogenase. | 0.517 |
SFS29817.1 | SFS54545.1 | SAMN04488006_0310 | SAMN04488006_2007 | Isochorismate synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.622 |
SFS29817.1 | SFS60021.1 | SAMN04488006_0310 | SAMN04488006_2252 | Isochorismate synthase. | Anthranilate synthase component 1. | 0.787 |
SFS29817.1 | SFS60026.1 | SAMN04488006_0310 | SAMN04488006_2253 | Isochorismate synthase. | Anthranilate synthase component 2. | 0.959 |
SFS29817.1 | SFS80671.1 | SAMN04488006_0310 | SAMN04488006_0145 | Isochorismate synthase. | Shikimate dehydrogenase. | 0.836 |
SFS29817.1 | aroC | SAMN04488006_0310 | SAMN04488006_2630 | Isochorismate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.935 |
SFS29817.1 | trpD | SAMN04488006_0310 | SAMN04488006_2254 | Isochorismate synthase. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.830 |
SFS34334.1 | SFS29817.1 | SAMN04488006_0826 | SAMN04488006_0310 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Isochorismate synthase. | 0.483 |
SFS34334.1 | SFS53416.1 | SAMN04488006_0826 | SAMN04488006_1902 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.994 |
SFS34334.1 | SFS53427.1 | SAMN04488006_0826 | SAMN04488006_1903 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Prephenate dehydrogenase. | 0.680 |
SFS34334.1 | SFS54545.1 | SAMN04488006_0826 | SAMN04488006_2007 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.992 |
SFS34334.1 | SFS60021.1 | SAMN04488006_0826 | SAMN04488006_2252 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Anthranilate synthase component 1. | 0.463 |
SFS34334.1 | SFS60026.1 | SAMN04488006_0826 | SAMN04488006_2253 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Anthranilate synthase component 2. | 0.768 |
SFS34334.1 | SFS80671.1 | SAMN04488006_0826 | SAMN04488006_0145 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate dehydrogenase. | 0.984 |
SFS34334.1 | aroC | SAMN04488006_0826 | SAMN04488006_2630 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.969 |
SFS53416.1 | SFS29743.1 | SAMN04488006_1902 | SAMN04488006_0268 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.713 |
page 1 of 5