Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFS30319.1 | SFS53331.1 | SAMN04488006_0419 | SAMN04488006_1895 | Hypothetical protein. | [acyl-carrier-protein] S-malonyltransferase. | 0.563 |
SFS30319.1 | hemL | SAMN04488006_0419 | SAMN04488006_2755 | Hypothetical protein. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.860 |
SFS52090.1 | SFS53991.1 | SAMN04488006_1796 | SAMN04488006_1952 | Cytochrome c-type biogenesis protein CcsB. | uroporphyrinogen-III C-methyltransferase. | 0.791 |
SFS52090.1 | SFS71168.1 | SAMN04488006_1796 | SAMN04488006_2756 | Cytochrome c-type biogenesis protein CcsB. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.416 |
SFS52090.1 | SFS71179.1 | SAMN04488006_1796 | SAMN04488006_2757 | Cytochrome c-type biogenesis protein CcsB. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.883 |
SFS52090.1 | hemA | SAMN04488006_1796 | SAMN04488006_2758 | Cytochrome c-type biogenesis protein CcsB. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.558 |
SFS52090.1 | hemE | SAMN04488006_1796 | SAMN04488006_2754 | Cytochrome c-type biogenesis protein CcsB. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.479 |
SFS52090.1 | hemH | SAMN04488006_1796 | SAMN04488006_2760 | Cytochrome c-type biogenesis protein CcsB. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.472 |
SFS52090.1 | hemL | SAMN04488006_1796 | SAMN04488006_2755 | Cytochrome c-type biogenesis protein CcsB. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.574 |
SFS53331.1 | SFS30319.1 | SAMN04488006_1895 | SAMN04488006_0419 | [acyl-carrier-protein] S-malonyltransferase. | Hypothetical protein. | 0.563 |
SFS53331.1 | hemL | SAMN04488006_1895 | SAMN04488006_2755 | [acyl-carrier-protein] S-malonyltransferase. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.710 |
SFS53981.1 | SFS53991.1 | SAMN04488006_1951 | SAMN04488006_1952 | Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. | uroporphyrinogen-III C-methyltransferase. | 0.999 |
SFS53981.1 | SFS71168.1 | SAMN04488006_1951 | SAMN04488006_2756 | Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.746 |
SFS53981.1 | SFS71179.1 | SAMN04488006_1951 | SAMN04488006_2757 | Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.929 |
SFS53981.1 | hemA | SAMN04488006_1951 | SAMN04488006_2758 | Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.670 |
SFS53981.1 | hemE | SAMN04488006_1951 | SAMN04488006_2754 | Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.556 |
SFS53981.1 | hemL | SAMN04488006_1951 | SAMN04488006_2755 | Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.851 |
SFS53991.1 | SFS52090.1 | SAMN04488006_1952 | SAMN04488006_1796 | uroporphyrinogen-III C-methyltransferase. | Cytochrome c-type biogenesis protein CcsB. | 0.791 |
SFS53991.1 | SFS53981.1 | SAMN04488006_1952 | SAMN04488006_1951 | uroporphyrinogen-III C-methyltransferase. | Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. | 0.999 |
SFS53991.1 | SFS71168.1 | SAMN04488006_1952 | SAMN04488006_2756 | uroporphyrinogen-III C-methyltransferase. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.922 |
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