Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_0006Putative lipoprotein; Identified by match to protein family HMM PF07581. (493 aa)    
Predicted Functional Partners:
FSU_2102
Conserved domain protein; Identified by similarity to GB:AAQ59146.1.
  
     0.774
FSU_1851
Hypothetical protein; Identified by glimmer; putative.
  
     0.772
FSU_2678
Hypothetical protein; Identified by glimmer; putative.
  
     0.766
FSU_0007
Hypothetical protein; Identified by glimmer; putative.
       0.727
FSU_1339
Conserved domain protein; Identified by similarity to PIR:AF1772; match to protein family HMM TIGR02543.
  
     0.673
FSU_0008
2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.561
FSU_0307
Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.
  
     0.520
slyD
Peptidyl-prolyl cis-trans isomerase SlyD; Identified by similarity to SP:P30856; match to protein family HMM PF00254.
       0.499
FSU_2000
Antigen-like protein; Identified by similarity to GB:AAQ66633.1.
  
     0.490
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
     0.445
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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