FSU_0011 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0011

Putative protein kinase; Identified by match to protein family HMM PF00069. (349 aa)

Predicted Functional Partners:

FSU_2560

0.772

FSU_0010

0.761

nadB

0.711

FSU_2187

0.547

FSU_0013

0.543

FSU_2501

0.543

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0010	FSU_0011	FSU_0010	FSU_0011	Identified by match to protein family HMM PF02674.	Putative protein kinase; Identified by match to protein family HMM PF00069.	0.761
FSU_0010	FSU_0013	FSU_0010	FSU_0013	Identified by match to protein family HMM PF02674.	PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.	0.558
FSU_0010	nadB	FSU_0010	FSU_0012	Identified by match to protein family HMM PF02674.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.690
FSU_0011	FSU_0010	FSU_0011	FSU_0010	Putative protein kinase; Identified by match to protein family HMM PF00069.	Identified by match to protein family HMM PF02674.	0.761
FSU_0011	FSU_0013	FSU_0011	FSU_0013	Putative protein kinase; Identified by match to protein family HMM PF00069.	PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.	0.543
FSU_0011	FSU_2187	FSU_0011	FSU_2187	Putative protein kinase; Identified by match to protein family HMM PF00069.	Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM PF03781.	0.547
FSU_0011	FSU_2501	FSU_0011	FSU_2501	Putative protein kinase; Identified by match to protein family HMM PF00069.	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.543
FSU_0011	FSU_2560	FSU_0011	FSU_2560	Putative protein kinase; Identified by match to protein family HMM PF00069.	Protein kinase domain protein.	0.772
FSU_0011	nadB	FSU_0011	FSU_0012	Putative protein kinase; Identified by match to protein family HMM PF00069.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.711
FSU_0013	FSU_0010	FSU_0013	FSU_0010	PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.	Identified by match to protein family HMM PF02674.	0.558
FSU_0013	FSU_0011	FSU_0013	FSU_0011	PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.	Putative protein kinase; Identified by match to protein family HMM PF00069.	0.543
FSU_0013	nadB	FSU_0013	FSU_0012	PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.561
FSU_2187	FSU_0011	FSU_2187	FSU_0011	Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM PF03781.	Putative protein kinase; Identified by match to protein family HMM PF00069.	0.547
FSU_2501	FSU_0011	FSU_2501	FSU_0011	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Putative protein kinase; Identified by match to protein family HMM PF00069.	0.543
FSU_2501	FSU_2560	FSU_2501	FSU_2560	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Protein kinase domain protein.	0.547
FSU_2560	FSU_0011	FSU_2560	FSU_0011	Protein kinase domain protein.	Putative protein kinase; Identified by match to protein family HMM PF00069.	0.772
FSU_2560	FSU_2501	FSU_2560	FSU_2501	Protein kinase domain protein.	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.547
nadB	FSU_0010	FSU_0012	FSU_0010	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	Identified by match to protein family HMM PF02674.	0.690
nadB	FSU_0011	FSU_0012	FSU_0011	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	Putative protein kinase; Identified by match to protein family HMM PF00069.	0.711
nadB	FSU_0013	FSU_0012	FSU_0013	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.	0.561