Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0018Hypothetical protein; Identified by glimmer; putative. (178 aa)    
Predicted Functional Partners:
FSU_0019
Identified by match to protein family HMM PF03747.
       0.651
FSU_0017
Conserved hypothetical protein; Identified by similarity to GB:AAN70136.1; Belongs to the CvfB family.
       0.566
mutX
Mutator mutT protein; Identified by similarity to SP:P41354; match to protein family HMM PF00293.
  
     0.478
FSU_1392
Conserved domain protein; Identified by similarity to GB:AAL95253.1.
  
     0.467
FSU_0020
Conserved hypothetical protein; Identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167.
       0.462
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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