STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0065Identified by match to protein family HMM PF01734. (282 aa)    
Predicted Functional Partners:
FSU_0064
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553.
       0.773
FSU_0062
Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P51831; match to protein family HMM PF00106; match to protein family HMM PF08659.
       0.671
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Identified by similarity to SP:P21774; match to protein family HMM PF07977.
       0.671
FSU_0061
Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.614
FSU_0060
Putative acyl carrier protein; Identified by similarity to SP:P20804.
       0.563
FSU_1636
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
   
    0.498
FSU_2413
HD/GAF domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF01966.
   
    0.498
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.