STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0081Putative 3-demethylubiquinone-9 3-methyltransferase; Identified by similarity to SP:P17993; match to protein family HMM PF08241; match to protein family HMM PF08242. (258 aa)    
Predicted Functional Partners:
FSU_3080
Identified by match to protein family HMM PF00149.
   
   0.852
FSU_0082
Putative membrane protein.
       0.603
FSU_0080
Hypothetical protein; Identified by glimmer; putative.
       0.466
FSU_0083
Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.
       0.453
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.444
FSU_0084
Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.
       0.417
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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