STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0084Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174. (497 aa)    
Predicted Functional Partners:
FSU_0083
Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.
    0.990
FSU_0085
Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.
 
    0.934
FSU_0086
Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.
 
   
0.906
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
  0.610
FSU_0082
Putative membrane protein.
       0.519
FSU_0115
Putative glutamate-cysteine ligase; Identified by match to protein family HMM PF04107.
    
  0.437
FSU_0081
Putative 3-demethylubiquinone-9 3-methyltransferase; Identified by similarity to SP:P17993; match to protein family HMM PF08241; match to protein family HMM PF08242.
       0.417
gdhA
NADP-specific glutamate dehydrogenase; Identified by similarity to SP:P00370; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
  0.416
FSU_0248
Identified by match to protein family HMM PF00883; Belongs to the peptidase M17 family.
     
  0.408
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
     
  0.408
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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