FSU_0085 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0085

Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379. (293 aa)

Predicted Functional Partners:

FSU_0083

0.991

FSU_0086

0.970

FSU_0084

0.933

FSU_0082

0.458

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FSU_0082	FSU_0083	Putative membrane protein.	Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.	0.568
FSU_0082	FSU_0084	Putative membrane protein.	Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.	0.519
FSU_0082	FSU_0085	Putative membrane protein.	Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.	0.458
FSU_0082	FSU_0086	Putative membrane protein.	Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.	0.458
FSU_0083	FSU_0082	Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.	Putative membrane protein.	0.568
FSU_0083	FSU_0084	Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.	Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.	0.988
FSU_0083	FSU_0085	Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.	Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.	0.991
FSU_0083	FSU_0086	Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.	Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.	0.869
FSU_0084	FSU_0082	Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.	Putative membrane protein.	0.519
FSU_0084	FSU_0083	Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.	Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.	0.988
FSU_0084	FSU_0085	Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.	Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.	0.933
FSU_0084	FSU_0086	Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.	Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.	0.882
FSU_0085	FSU_0082	Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.	Putative membrane protein.	0.458
FSU_0085	FSU_0083	Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.	Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.	0.991
FSU_0085	FSU_0084	Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.	Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.	0.933
FSU_0085	FSU_0086	Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.	Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.	0.970
FSU_0086	FSU_0082	Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.	Putative membrane protein.	0.458
FSU_0086	FSU_0083	Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.	Conserved hypothetical protein; Identified by similarity to GB:BAC08719.1; match to protein family HMM PF04168.	0.869
FSU_0086	FSU_0084	Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.	Conserved hypothetical protein; Identified by similarity to GB:CAD76589.1; match to protein family HMM PF04169; match to protein family HMM PF04174.	0.882
FSU_0086	FSU_0085	Conserved hypothetical protein; Identified by similarity to PIR:E83031; match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174.	Transglutaminase domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.	0.970

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About