STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
atpAV-type ATPase, A subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. (585 aa)    
Predicted Functional Partners:
atpE
V-type sodium ATPase, E subunit.
 
 0.999
atpB
V-type ATPase, B subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
0.999
atpD
V-type ATPase, D subunit; Identified by match to protein family HMM PF01813; match to protein family HMM TIGR00309.
 
 0.999
atpI
V-type ATPase, I subunit; Identified by match to protein family HMM PF01496.
 
 0.999
atpK_1
V-type ATPase, K subunit.
 
 0.998
atpK_2
V-type ATPase, K subunit.
 
 0.997
FSU_0092
Conserved hypothetical protein; Identified by similarity to GB:AAS11897.1.
       0.736
FSU_2329
Conserved domain protein; Identified by similarity to GB:BAC15296.1.
    
 0.708
ppa
Inorganic diphosphatase; Identified by similarity to SP:P38576; match to protein family HMM PF00719.
   
 
 0.597
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
   0.510
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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