STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0108Nitroreductase family protein; Identified by similarity to SP:O30013; match to protein family HMM PF00881. (173 aa)    
Predicted Functional Partners:
FSU_1991
Nitroreductase family protein; Identified by similarity to GB:AAG14888.1; match to protein family HMM PF00881.
  
     0.730
FSU_0109
Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.
       0.665
purB
Adenylosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.555
FSU_1921
Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.
  
  
 0.494
FSU_1328
Putative transporter; Identified by similarity to GB:AAQ65338.1.
  
  
 0.490
FSU_1329
Putative membrane protein.
  
  
 0.490
FSU_0107
Conserved hypothetical protein; Identified by match to protein family HMM PF03382; match to protein family HMM TIGR02167.
       0.479
metS
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.441
FSU_0105
Conserved hypothetical protein; Identified by similarity to GB:AAP77410.1; match to protein family HMM TIGR02167.
       0.420
FSU_0106
Hypothetical protein; Identified by glimmer; putative.
       0.420
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.