STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0137Putative type II restriction endonuclease; Possibly an isoschizomer of SeqORFC57P found in Streptococcus equi; identified by similarity to SP:P00640; match to protein family HMM PF06616. (304 aa)    
Predicted Functional Partners:
FSU_0136
Putative type II DNA modification methyltransferase; Possibly an isoschizomer of M.SeqORFC57P found in Streptococcus equi ; identified by similarity to SP:P33563; match to protein family HMM PF07669.
     0.994
FSU_3237
Conserved hypothetical protein; Identified by similarity to GB:AAO36720.1.
  
     0.522
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.492
FSU_3239
Conserved hypothetical protein; Identified by similarity to PIR:A69229.
  
     0.437
dcm
Cytosine specific DNA methyltransferase; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
      0.423
FSU_3231
Hydro-lyase, tartrate/fumarate family; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722.
  
     0.417
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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