Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_0206Xylanase; Identified by similarity to GB:AAB53151.1; match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family. (498 aa)    
Predicted Functional Partners:
xynC
Endo-1,4-beta-xylanase; Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.
  
   
 0.902
FSU_2269
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
 
  0.898
FSU_0226
Licheninase; Identified by similarity to SP:P17989; match to protein family HMM PF00722.
 
   
 0.822
FSU_2262
Putative endo-1,4-beta-xylanase; Identified by similarity to SP:P45796; match to protein family HMM PF03422; match to protein family HMM PF04616.
  
 
  0.784
FSU_2274
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
  
 
  0.779
FSU_2263
Putative endo-1,4-beta-xylanase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
  
 
  0.776
FSU_2519
Carbohydrate-binding protein, CBM family 6; Identified by match to protein family HMM PF03422; match to protein family HMM PF07745.
  
  
  0.775
FSU_2795
Xylanase-like protein; Identified by similarity to GB:AAB63573.1.
  
     0.773
FSU_2264
Putative endo-1,4-beta-xylanase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
  
 
  0.772
FSU_0192
Putative xylanase; Identified by similarity to SP:P45796; match to protein family HMM PF03422; match to protein family HMM PF04616.
  
 
  0.766
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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