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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0217Putative 6-pyruvoyl tetrahydrobiopterin synthase; Identified by match to protein family HMM PF01242. (109 aa)    
Predicted Functional Partners:
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
 
 
 0.998
queC
Protein ExsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
 
  
 0.991
folE
GTP cyclohydrolase I; Identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063.
  
 
 0.984
FSU_2580
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
  
 0.823
FSU_1197
Conserved hypothetical protein; Identified by similarity to GB:AAP77747.1; match to protein family HMM PF00027.
    
  0.583
FSU_1945
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
    
  0.583
FSU_2116
Putative transcriptional regulator; Identified by similarity to SP:P03020; match to protein family HMM PF00027.
    
  0.583
FSU_2960
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
    
  0.583
FSU_2961
Hypothetical protein; Identified by glimmer; putative.
    
  0.583
FSU_0574
Conserved hypothetical protein; Identified by similarity to GB:CAE26866.1.
    
  0.582
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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