STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0241Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family. (341 aa)    
Predicted Functional Partners:
FSU_0240
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
 
 0.992
FSU_0832
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
 
 0.720
speA
Arginine 2-monooxygenase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.657
FSU_3136
Conserved hypothetical protein; Identified by similarity to GB:AAO76206.1.
    
 0.553
FSU_1626
Identified by match to protein family HMM PF01564.
    
 0.538
FSU_0920
Putative saccharopine dehydrogenase; Identified by similarity to GP:29895023; match to protein family HMM PF03435.
    
  0.522
nspC
Carboxynorspermidine decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047.
    
 0.490
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.490
FSU_0004
NAD+ synthetase, glutamine-dependent; Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family.
  
 
 0.430
nadE
NAD+ synthetase, glutamine-dependent; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.430
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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