STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0248Identified by match to protein family HMM PF00883; Belongs to the peptidase M17 family. (512 aa)    
Predicted Functional Partners:
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
 0.822
cysK_1
Cysteine synthase A; Identified by similarity to GB:AAG01002.1; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139.
    
 0.815
FSU_1054
Identified by similarity to SP:O23733; match to protein family HMM PF00291.
    
 0.815
cysK_2
Cysteine synthase A; Identified by similarity to GB:AAG01002.1; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.815
FSU_1538
Identified by similarity to SP:Q43725; match to protein family HMM PF00291.
    
 0.815
FSU_1549
Identified by similarity to SP:Q9XEA8; match to protein family HMM PF00291.
    
 0.815
FSU_1553
Cysteine synthase family protein; Identified by similarity to GB:AAG01002.1; match to protein family HMM PF00291.
    
 0.815
FSU_0518
Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155.
   
  0.813
FSU_1556
Aminotransferase, class I/II; Identified by match to protein family HMM PF00155.
  
 
  0.805
FSU_1537
Putative cystathionine beta/gamma-lyase; Identified by similarity to SP:Q9RAS9; match to protein family HMM PF01053.
   
 
  0.800
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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