STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0253Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476. (792 aa)    
Predicted Functional Partners:
FSU_3206
Lipoprotein releasing system transmembrane protein, LolC/E family; Identified by match to protein family HMM PF02687.
 
     0.570
secDF
Protein-export membrane protein SecDF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.568
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
 
  
 0.564
FSU_0764
Identified by match to protein family HMM PF01520.
 
  
 0.555
FSU_2295
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
  
 0.544
FSU_0252
Identified by match to protein family HMM PF00023.
       0.517
mltG
Conserved hypothetical protein TIGR00247; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
  
 0.505
FSU_3179
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
 
  
 0.505
guaA
GMP synthase; Identified by similarity to SP:P04079; match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00888.
     
 0.471
pal
Putative peptidoglycan-associated lipoprotein; Identified by similarity to SP:P07176; match to protein family HMM PF00691; Belongs to the Pal lipoprotein family.
 
 
 
 0.465
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.