STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0255Thrombospondin type 3 repeat protein; Identified by match to protein family HMM PF02412. (708 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Identified by similarity to SP:P04079; match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00888.
  
 
  0.568
FSU_0847
LysM domain protein; Identified by match to protein family HMM PF01476.
 
 
 0.492
FSU_2396
Identified by match to protein family HMM PF00691.
  
     0.477
FSU_2402
Conserved hypothetical protein; Identified by similarity to GB:AAO22897.1.
  
 
   0.472
FSU_1359
Conserved domain protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF07715.
  
   
 0.470
FSU_0285
Putative chemotaxis MotB protein; Identified by similarity to SP:P28612; match to protein family HMM PF00691.
  
 0.431
FSU_1668
Putative lipoprotein; Identified by match to protein family HMM PF00300.
  
     0.431
FSU_2403
Identified by match to protein family HMM TIGR01352.
  
 
   0.429
FSU_2655
Outer membrane protein, OmpH family; Identified by similarity to GB:AAD23980.1; match to protein family HMM PF03938.
 
 
 0.422
FSU_1938
Receptor family ligand binding region protein.
  
  
  0.411
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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