FSU_0268 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0268

Putative membrane protein. (781 aa)

Predicted Functional Partners:

FSU_0272

0.937

FSU_0266

0.936

FSU_0269

0.933

FSU_0270

0.933

FSU_0265

0.912

fabF_1

0.890

FSU_0267

0.884

FSU_0274

0.825

hutH

0.814

FSU_0276

0.788

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0265	FSU_0266	FSU_0265	FSU_0266	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Thioester dehydrase family protein.	0.936
FSU_0265	FSU_0267	FSU_0265	FSU_0267	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Putative 3-oxoacyl-acyl carrier protein synthase II; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.995
FSU_0265	FSU_0268	FSU_0265	FSU_0268	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Putative membrane protein.	0.912
FSU_0265	FSU_0269	FSU_0265	FSU_0269	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Conserved hypothetical protein; Identified by similarity to GB:BAC59150.1.	0.882
FSU_0265	FSU_0270	FSU_0265	FSU_0270	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Identified by match to protein family HMM PF03061.	0.889
FSU_0265	FSU_0272	FSU_0265	FSU_0272	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Conserved hypothetical protein; Identified by similarity to GB:AAM43229.1; match to protein family HMM PF03279.	0.888
FSU_0265	FSU_0274	FSU_0265	FSU_0274	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Identified by match to protein family HMM PF00501.	0.715
FSU_0265	FSU_0276	FSU_0265	FSU_0276	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Putative acyl carrier protein; Identified by similarity to GB:AAG38843.1.	0.749
FSU_0265	fabF_1	FSU_0265	FSU_0264	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	3-oxoacyl-(acyl-carrier-protein) synthase II; Identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.995
FSU_0265	hutH	FSU_0265	FSU_0271	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	Histidine ammonia-lyase; Identified by similarity to SP:P10944; match to protein family HMM PF00221.	0.673
FSU_0266	FSU_0265	FSU_0266	FSU_0265	Thioester dehydrase family protein.	Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.	0.936
FSU_0266	FSU_0267	FSU_0266	FSU_0267	Thioester dehydrase family protein.	Putative 3-oxoacyl-acyl carrier protein synthase II; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.915
FSU_0266	FSU_0268	FSU_0266	FSU_0268	Thioester dehydrase family protein.	Putative membrane protein.	0.936
FSU_0266	FSU_0269	FSU_0266	FSU_0269	Thioester dehydrase family protein.	Conserved hypothetical protein; Identified by similarity to GB:BAC59150.1.	0.916
FSU_0266	FSU_0270	FSU_0266	FSU_0270	Thioester dehydrase family protein.	Identified by match to protein family HMM PF03061.	0.919
FSU_0266	FSU_0272	FSU_0266	FSU_0272	Thioester dehydrase family protein.	Conserved hypothetical protein; Identified by similarity to GB:AAM43229.1; match to protein family HMM PF03279.	0.916
FSU_0266	FSU_0274	FSU_0266	FSU_0274	Thioester dehydrase family protein.	Identified by match to protein family HMM PF00501.	0.841
FSU_0266	FSU_0276	FSU_0266	FSU_0276	Thioester dehydrase family protein.	Putative acyl carrier protein; Identified by similarity to GB:AAG38843.1.	0.776
FSU_0266	fabF_1	FSU_0266	FSU_0264	Thioester dehydrase family protein.	3-oxoacyl-(acyl-carrier-protein) synthase II; Identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.941
FSU_0266	hutH	FSU_0266	FSU_0271	Thioester dehydrase family protein.	Histidine ammonia-lyase; Identified by similarity to SP:P10944; match to protein family HMM PF00221.	0.836