STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutHHistidine ammonia-lyase; Identified by similarity to SP:P10944; match to protein family HMM PF00221. (508 aa)    
Predicted Functional Partners:
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.923
FSU_0269
Conserved hypothetical protein; Identified by similarity to GB:BAC59150.1.
 
     0.864
FSU_0272
Conserved hypothetical protein; Identified by similarity to GB:AAM43229.1; match to protein family HMM PF03279.
 
     0.844
FSU_0266
Thioester dehydrase family protein.
 
     0.836
FSU_0268
Putative membrane protein.
 
     0.814
FSU_0270
Identified by match to protein family HMM PF03061.
 
    0.791
FSU_3136
Conserved hypothetical protein; Identified by similarity to GB:AAO76206.1.
  
  
 0.781
FSU_0274
Identified by match to protein family HMM PF00501.
 
   
 0.674
fabF_1
3-oxoacyl-(acyl-carrier-protein) synthase II; Identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.673
FSU_0265
Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01831.
 
     0.673
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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