STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0274Identified by match to protein family HMM PF00501. (788 aa)    
Predicted Functional Partners:
FSU_0275
Putative acyl carrier protein; Identified by similarity to SP:P11830; match to protein family HMM PF00550.
 
  
 0.962
FSU_0276
Putative acyl carrier protein; Identified by similarity to GB:AAG38843.1.
 
  
 0.962
FSU_0278
Conserved domain protein; Identified by similarity to OMNI:SO4366.
 
     0.887
FSU_0279
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; Identified by similarity to SP:Q42670; match to protein family HMM PF01553.
 
    0.887
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
 
 0.839
FSU_0270
Identified by match to protein family HMM PF03061.
 
 
 0.838
FSU_0266
Thioester dehydrase family protein.
 
  
 0.830
FSU_0268
Putative membrane protein.
 
     0.814
FSU_0272
Conserved hypothetical protein; Identified by similarity to GB:AAM43229.1; match to protein family HMM PF03279.
 
     0.804
FSU_0269
Conserved hypothetical protein; Identified by similarity to GB:BAC59150.1.
  
     0.774
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.