STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0285Putative chemotaxis MotB protein; Identified by similarity to SP:P28612; match to protein family HMM PF00691. (216 aa)    
Predicted Functional Partners:
FSU_0748
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.850
FSU_0286
Fimbriae-associated domain protein; Identified by similarity to GP:3929312.
 
    0.817
FSU_2396
Identified by match to protein family HMM PF00691.
  
 0.810
FSU_0504
PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.
 
 
 0.787
FSU_0284
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0287
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0288
Conserved hypothetical protein; Identified by similarity to GB:BAC95135.1.
       0.773
FSU_0289
Putative lipoprotein.
       0.773
FSU_0539
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.722
FSU_1003
ompA family protein; Identified by similarity to PIR:B82819; match to protein family HMM PF00691; match to protein family HMM PF02412.
  
 0.720
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.