STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0286Fimbriae-associated domain protein; Identified by similarity to GP:3929312. (632 aa)    
Predicted Functional Partners:
FSU_0285
Putative chemotaxis MotB protein; Identified by similarity to SP:P28612; match to protein family HMM PF00691.
 
    0.817
FSU_0459
Conserved hypothetical protein.
  
 
   0.797
FSU_2931
Cadherin domain protein; Identified by match to protein family HMM PF00028.
  
 
   0.788
FSU_1953
Conserved domain protein; Identified by similarity to GB:CAD69025.1; match to protein family HMM TIGR02148.
  
   
 0.777
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.776
FSU_2403
Identified by match to protein family HMM TIGR01352.
  
  
  0.776
FSU_0288
Conserved hypothetical protein; Identified by similarity to GB:BAC95135.1.
   
   0.775
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.775
FSU_1728
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
    0.775
FSU_1954
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
     0.775
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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