STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0288Conserved hypothetical protein; Identified by similarity to GB:BAC95135.1. (238 aa)    
Predicted Functional Partners:
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
   
 
 0.848
FSU_0286
Fimbriae-associated domain protein; Identified by similarity to GP:3929312.
   
   0.777
FSU_0284
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0285
Putative chemotaxis MotB protein; Identified by similarity to SP:P28612; match to protein family HMM PF00691.
       0.773
FSU_0287
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0289
Putative lipoprotein.
       0.773
FSU_2475
Hypothetical protein; Identified by glimmer; putative.
   
 
 0.759
tadA
Cytidine/deoxycytidylate deaminase zinc-binding domain protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.705
FSU_0283
Conserved domain protein; Identified by similarity to GB:AAM71308.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145.
       0.651
FSU_0291
Putative membrane protein.
       0.425
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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