STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0305nirD domain protein; Identified by similarity to PIR:G83581. (287 aa)    
Predicted Functional Partners:
FSU_0306
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
 0.951
FSU_0293
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
 0.921
FSU_0626
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
 
 0.743
FSU_0514
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
 
 0.728
FSU_0300
Siroheme synthase; Identified by match to protein family HMM PF01903; match to protein family HMM TIGR01470.
 
 
 0.725
hemDX
Porphyrin biosynthesis protein HemDX; Also 4.2.1.75; identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.
 
 
 0.712
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
 0.660
FSU_0307
Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.
       0.627
FSU_2014
Putative para-aminobenzoate synthetase; Identified by similarity to SP:P28820; match to protein family HMM PF00425.
     
 0.618
trpD
Anthranilate synthase component II; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
  
 
  0.556
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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