FSU_0306 protein (Fibrobacter succinogenes) - STRING interaction network

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Score

FSU_0306

Radical SAM domain protein; Identified by match to protein family HMM PF04055. (390 aa)

Predicted Functional Partners:

FSU_0305

0.951

FSU_0307

0.682

ribA

0.555

FSU_2995

0.545

hemDX

0.502

tgt_1

0.427

FSU_0309

0.420

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0305	FSU_0306	FSU_0305	FSU_0306	nirD domain protein; Identified by similarity to PIR:G83581.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.951
FSU_0305	FSU_0307	FSU_0305	FSU_0307	nirD domain protein; Identified by similarity to PIR:G83581.	Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.	0.627
FSU_0305	hemDX	FSU_0305	FSU_0301	nirD domain protein; Identified by similarity to PIR:G83581.	Porphyrin biosynthesis protein HemDX; Also 4.2.1.75; identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.	0.712
FSU_0305	tgt_1	FSU_0305	FSU_0308	nirD domain protein; Identified by similarity to PIR:G83581.	tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]	0.404
FSU_0306	FSU_0305	FSU_0306	FSU_0305	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	nirD domain protein; Identified by similarity to PIR:G83581.	0.951
FSU_0306	FSU_0307	FSU_0306	FSU_0307	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.	0.682
FSU_0306	FSU_0309	FSU_0306	FSU_0309	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Hypothetical protein; Identified by glimmer; putative.	0.420
FSU_0306	FSU_2995	FSU_0306	FSU_2995	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Adenylate/guanylate cyclase domain protein; Identified by match to protein family HMM PF00211; match to protein family HMM PF05226.	0.545
FSU_0306	hemDX	FSU_0306	FSU_0301	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Porphyrin biosynthesis protein HemDX; Also 4.2.1.75; identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.	0.502
FSU_0306	ribA	FSU_0306	FSU_3307	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.555
FSU_0306	tgt_1	FSU_0306	FSU_0308	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]	0.427
FSU_0307	FSU_0305	FSU_0307	FSU_0305	Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.	nirD domain protein; Identified by similarity to PIR:G83581.	0.627
FSU_0307	FSU_0306	FSU_0307	FSU_0306	Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.682
FSU_0307	FSU_0309	FSU_0307	FSU_0309	Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.	Hypothetical protein; Identified by glimmer; putative.	0.468
FSU_0307	tgt_1	FSU_0307	FSU_0308	Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.	tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]	0.468
FSU_0309	FSU_0306	FSU_0309	FSU_0306	Hypothetical protein; Identified by glimmer; putative.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.420
FSU_0309	FSU_0307	FSU_0309	FSU_0307	Hypothetical protein; Identified by glimmer; putative.	Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.	0.468
FSU_0309	tgt_1	FSU_0309	FSU_0308	Hypothetical protein; Identified by glimmer; putative.	tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]	0.773
FSU_2995	FSU_0306	FSU_2995	FSU_0306	Adenylate/guanylate cyclase domain protein; Identified by match to protein family HMM PF00211; match to protein family HMM PF05226.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.545
FSU_2995	ribA	FSU_2995	FSU_3307	Adenylate/guanylate cyclase domain protein; Identified by match to protein family HMM PF00211; match to protein family HMM PF05226.	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.634