STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0307Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543. (831 aa)    
Predicted Functional Partners:
FSU_0306
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
       0.682
FSU_2681
Hypothetical protein; Identified by glimmer; putative.
  
 
   0.662
FSU_0305
nirD domain protein; Identified by similarity to PIR:G83581.
       0.627
FSU_2546
Hypothetical protein; Identified by glimmer; putative.
  
     0.579
FSU_0006
Putative lipoprotein; Identified by match to protein family HMM PF07581.
  
     0.520
FSU_1638
Hypothetical protein; Identified by glimmer; putative.
  
     0.480
FSU_1851
Hypothetical protein; Identified by glimmer; putative.
  
 
   0.473
tgt_1
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
       0.468
FSU_0309
Hypothetical protein; Identified by glimmer; putative.
       0.468
FSU_1981
Hypothetical protein; Identified by glimmer; putative.
  
     0.405
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.