FSU_0324 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0324

Conserved hypothetical protein; Identified by similarity to PIR:E86127. (243 aa)

Predicted Functional Partners:

FSU_0325

0.939

FSU_0748

0.816

FSU_0322

0.786

FSU_0323

0.768

FSU_0504

0.758

FSU_0539

0.722

FSU_0402

0.691

FSU_0147

0.659

FSU_2295

0.625

FSU_0326

0.620

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FSU_0147	FSU_0324	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	0.659
FSU_0147	FSU_0325	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Conserved hypothetical protein; Identified by similarity to PIR:D82160.	0.604
FSU_0147	FSU_0402	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Conserved domain protein; Identified by similarity to PIR:T07884.	0.595
FSU_0147	FSU_0504	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	0.668
FSU_0147	FSU_0748	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.991
FSU_0147	FSU_2295	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.988
FSU_0322	FSU_0323	SNF2/helicase/endonuclease domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04471.	Hypothetical protein; Identified by glimmer; putative.	0.773
FSU_0322	FSU_0324	SNF2/helicase/endonuclease domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04471.	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	0.786
FSU_0322	FSU_0325	SNF2/helicase/endonuclease domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04471.	Conserved hypothetical protein; Identified by similarity to PIR:D82160.	0.867
FSU_0322	FSU_0326	SNF2/helicase/endonuclease domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04471.	Hypothetical protein; Identified by glimmer; putative.	0.616
FSU_0323	FSU_0322	Hypothetical protein; Identified by glimmer; putative.	SNF2/helicase/endonuclease domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04471.	0.773
FSU_0323	FSU_0324	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	0.768
FSU_0323	FSU_0325	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein; Identified by similarity to PIR:D82160.	0.768
FSU_0323	FSU_0326	Hypothetical protein; Identified by glimmer; putative.	Hypothetical protein; Identified by glimmer; putative.	0.616
FSU_0324	FSU_0147	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.659
FSU_0324	FSU_0322	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	SNF2/helicase/endonuclease domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04471.	0.786
FSU_0324	FSU_0323	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	Hypothetical protein; Identified by glimmer; putative.	0.768
FSU_0324	FSU_0325	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	Conserved hypothetical protein; Identified by similarity to PIR:D82160.	0.939
FSU_0324	FSU_0326	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	Hypothetical protein; Identified by glimmer; putative.	0.620
FSU_0324	FSU_0402	Conserved hypothetical protein; Identified by similarity to PIR:E86127.	Conserved domain protein; Identified by similarity to PIR:T07884.	0.691