STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0335Hypothetical protein; Identified by glimmer; putative. (328 aa)    
Predicted Functional Partners:
fabF_3
3-oxoacyl-(acyl-carrier-protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.773
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
     0.759
FSU_0101
Putative lipoprotein.
  
     0.736
FSU_1942
Hypothetical protein; Identified by glimmer; putative.
  
     0.728
FSU_0334
Identified by match to protein family HMM PF00209; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
       0.718
FSU_2000
Antigen-like protein; Identified by similarity to GB:AAQ66633.1.
  
     0.716
FSU_0501
Putative lipoprotein.
  
     0.710
FSU_2434
Hypothetical protein; Identified by glimmer; putative.
  
     0.709
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
  
     0.687
FSU_2598
Hypothetical protein; Identified by glimmer; putative.
  
     0.664
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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