STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0358Conserved hypothetical protein; Identified by similarity to GB:AAM36557.1. (327 aa)    
Predicted Functional Partners:
FSU_0357
wxcM family protein; Identified by similarity to GB:AAO06351.1; match to protein family HMM PF05523.
 
     0.775
FSU_0359
RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.
       0.727
FSU_0498
LPS O-antigen translocase; Identified by similarity to SP:P27834.
 
     0.708
FSU_0360
Identified by match to protein family HMM PF00483.
       0.642
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
    
 0.571
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
   
 
 0.565
FSU_0362
UDP-3-O-acyl N-acetylglycosamine deacetylase-like protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis. Belongs to the LpxC family.
       0.564
FSU_0361
Putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase; Identified by similarity to SP:P21774; match to protein family HMM PF07977.
       0.532
FSU_2000
Antigen-like protein; Identified by similarity to GB:AAQ66633.1.
 
     0.512
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
     0.485
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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