STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0392Hypothetical protein; Identified by glimmer; putative. (191 aa)    
Predicted Functional Partners:
FSU_0391
Identified by match to protein family HMM PF00494.
       0.779
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.773
rluD
Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; Belongs to the pseudouridine synthase RluA family.
       0.741
FSU_0388
Putative UDP-N-acetylmuramate--alanine ligase murC; Identified by similarity to SP:P17952; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245.
       0.685
FSU_0393
Hypothetical protein; Identified by glimmer; putative.
       0.572
dnaA_2
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
       0.476
FSU_0387
Hydrolase, ATZ/TRZ family; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
       0.431
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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