STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0396Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1. (262 aa)    
Predicted Functional Partners:
FSU_0397
Putative membrane protein.
   
 0.938
FSU_0398
Conserved hypothetical protein; Identified by similarity to GB:AAS12525.1.
 
     0.933
FSU_2237
Putative transporter; Identified by similarity to GB:AAQ66280.1.
   
 0.885
FSU_2177
Putative membrane protein.
   
 0.847
FSU_2239
Conserved hypothetical protein; Identified by similarity to GB:AAQ66278.1.
 
     0.780
FSU_3206
Lipoprotein releasing system transmembrane protein, LolC/E family; Identified by match to protein family HMM PF02687.
   
 
 0.671
FSU_0395
Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.
       0.444
FSU_2995
Adenylate/guanylate cyclase domain protein; Identified by match to protein family HMM PF00211; match to protein family HMM PF05226.
  
     0.444
FSU_1662
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
  
     0.410
FSU_2400
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
     0.407
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.