STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0398Conserved hypothetical protein; Identified by similarity to GB:AAS12525.1. (467 aa)    
Predicted Functional Partners:
FSU_0397
Putative membrane protein.
 
     0.947
FSU_0396
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
 
   
 0.933
FSU_2238
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
 
   
 0.781
FSU_2177
Putative membrane protein.
 
     0.779
FSU_2237
Putative transporter; Identified by similarity to GB:AAQ66280.1.
 
     0.779
FSU_1662
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
  
     0.507
FSU_1034
Conserved domain protein; Identified by similarity to GB:AAL95231.1.
  
     0.496
FSU_0395
Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.
       0.414
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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